Basic Information
Locus ID:
Pt_Chr0605327
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 166646639 | 166656619 | + | Pt_Chr0605327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 125,153.53 Da | 41.38 | 76.51 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 912 | 944 | 0.0083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 439 | 475 | 3.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 479 | 1093 | 4.16E-41 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 336 | 653 | 3.95E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 734 | 961 | 1.9E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 317 | 530 | 5.1E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 962 | 1100 | 6.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 531 | 669 | 7.7E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1060 | 1092 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 611 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 564 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 367 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 434 | 475 | 1.8E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.5E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1001 | 1037 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 518 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 2.2 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 823 | 860 | 120.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 441 | 476 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.556183 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 589 | 620 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 944 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 944 | 9.915599 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 441 | 476 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 334 | 376 | 9.004632 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 462 | 476 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1093 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_047072561.1 | protein TPR1 isoform X1 [Lolium rigidum] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | I1HE01 | Topless-related protein 3-like OS=Brachypodium distachyon OX=15368 GN=100834097 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology