halophFGD

Basic Information

Locus ID: Pt_Chr0605042

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr06	154343199	154351446	-	Pt_Chr0605042

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.36	97,001.05 Da	60.62	58.73	-0.62

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06972	Protein of unknown function (DUF1296)	91	149	2.0E-27	IPR009719
SUPERFAMILY	SSF46934	UBA-like	92	150	5.0E-12	IPR009060
MobiDBLite	mobidb-lite	consensus disorder prediction	501	517	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	498	517	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	873	909	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	158	190	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	132	190	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	68	92	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	274	295	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	137	155	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08081 (tropinone reductase I [EC:1.1.1.206])

Pathway:

ko00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) map00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R02832 (Tropine + NADP+ <=> Tropinone + NADPH + H+)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G29370.1	Kinase-related protein of unknown function (DUF1296).
RefSeq	XP_047057438.1	uncharacterized protein LOC124663828 [Lolium rigidum]
TrEMBL	W5CU03	(bread wheat) hypothetical protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF070800020CFD_c1 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20712, jg22220, jg24994, jg38737
Aizoaceae	Mesembryanthemum crystallinum	1	gene_22445
Amaranthaceae	Atriplex hortensis	1	Ah016636
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg40507, Sbi_jg50543
Amaranthaceae	Salicornia europaea	1	Seu_jg2105
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018035
Amaranthaceae	Suaeda glauca	2	Sgl45294, Sgl50077
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000010414, gene:ENSEOMG00000033701 ... gene:ENSEOMG00000048501
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0008580, CQ.Regalona.r1.8BG0009340
Anacardiaceae	Pistacia vera	1	pistato.v30070560
Apiaceae	Apium graveolens	3	Ag7G00877, Ag8G00805, AgUnG00194
Arecaceae	Cocos nucifera	1	COCNU_14G004340
Arecaceae	Phoenix dactylifera	2	gene-LOC103712704, gene-LOC103714980
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3147.V1.1, AsparagusV1_01.3598.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G20590, Ftri18G18679, Ftri5G13444
Brassicaceae	Arabidopsis thaliana	3	AT1G29350.1, AT1G29370.1, AT4G18150.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10006794m.g.v1.0, Thhalv10016218m.g.v1.0 ... Thhalv10027504m.g.v1.0, Thhalv10027613m.g.v1.0, Thhalv10028089m.g.v1.0, Thhalv10028301m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g25300.v2.2, Sp1g25310.v2.2, Sp7g15970.v2.2 ... SpUn0746_0010.v2.2, SpUn1257_0010.v2.2
Brassicaceae	Brassica nigra	11	BniB01g010000.2N, BniB03g016620.2N, BniB03g033730.2N ... BniB04g043960.2N, BniB05g018290.2N, BniB07g011920.2N, BniB07g023160.2N, BniB07g027260.2N, BniB08g021660.2N, BniB08g056180.2N, BniB08g066610.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0394
Casuarinaceae	Casuarina glauca	1	Cgl04G0494
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g09800, gene.Cymno11g00400
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g14420
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10752, nbisL1-mrna-4714
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.698
Plantaginaceae	Plantago ovata	2	Pov_00013226, Pov_00038421
Plumbaginaceae	Limonium bicolor	1	Lb2G14557
Poaceae	Echinochloa crus-galli	9	AH02.2650, AH05.1247, AH05.1373, BH02.2726, BH05.1430 ... BH05.1541, CH02.3809, CH05.1614, CH05.1742
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0027630, gene-QOZ80_1BG0077810 ... gene-QOZ80_5AG0362860, gene-QOZ80_5BG0410230, gene-QOZ80_5BG0410990, gene-QOZ80_5BG0411560
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0089390.1, HORVU.MOREX.r3.1HG0092090.2 ... HORVU.MOREX.r3.3HG0277810.1
Poaceae	Lolium multiflorum	3	gene-QYE76_015218, gene-QYE76_015346, gene-QYE76_054416
Poaceae	Oryza coarctata	6	Oco01G016540, Oco02G016690, Oco09G016960, Oco09G017780 ... Oco10G016850, Oco10G017650
Poaceae	Oryza sativa	3	LOC_Os01g47430.1, LOC_Os05g49180.1, LOC_Os05g50480.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G221700, gene-BS78_09G238300 ... gene-BS78_09G249600
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0505682, Pt_Chr0506019, Pt_Chr0506042, Pt_Chr0605032 ... Pt_Chr0605042
Poaceae	Sporobolus alterniflorus	12	Chr01G015720, Chr01G016140, Chr02G013540, Chr03G012030 ... Chr05G020220, Chr08G012230, Chr0G019240, Chr12G020590, Chr12G021010, Chr18G016790, Chr22G000400, Chr22G001080
Poaceae	Thinopyrum elongatum	3	Tel1E01G668400, Tel1E01G697000, Tel3E01G403900
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG059530, gene_TRIDC1AG061840 ... gene_TRIDC1BG068250, gene_TRIDC1BG070880, gene_TRIDC3AG036080, gene_TRIDC3BG040460, gene_TRIDC5BG053720
Poaceae	Triticum aestivum	7	TraesCS1A02G403900.1, TraesCS1A02G420300.1 ... TraesCS1B02G433400.1, TraesCS1B02G450700.1, TraesCS1D02G411700.1, TraesCS1D02G428100.1, TraesCS3B02G269500.1
Poaceae	Zea mays	11	Zm00001eb093020_P001, Zm00001eb157580_P001 ... Zm00001eb242520_P001, Zm00001eb248320_P001, Zm00001eb267150_P001, Zm00001eb267980_P001, Zm00001eb296100_P002, Zm00001eb297070_P002, Zm00001eb343930_P002, Zm00001eb344700_P001, Zm00001eb359640_P001
Poaceae	Zoysia japonica	5	nbis-gene-13637, nbis-gene-24748, nbis-gene-24836 ... nbis-gene-26002, nbis-gene-56145
Poaceae	Zoysia macrostachya	6	Zma_g10818, Zma_g27396, Zma_g27444, Zma_g28815, Zma_g28882 ... Zma_g8378
Portulacaceae	Portulaca oleracea	4	evm.TU.LG18.1025, evm.TU.LG18.229, evm.TU.LG20.851 ... evm.TU.LG26.813
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g00990
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.861, evm.TU.Scaffold_16_RagTag.778
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16626, nbisL1-mrna-24954
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-5481, nbisL1-mrna-6445
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17184, nbisL1-mrna-19170
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000022l.99, evm.TU.utg000025l.72
Rhizophoraceae	Kandelia obovata	2	Maker00012341, Maker00016191
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15917, nbisL1-mrna-99
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10347, nbisL1-mrna-11067
Salicaceae	Populus euphratica	5	populus_peu00976, populus_peu00977, populus_peu14971 ... populus_peu17921, populus_peu17940
Solanaceae	Lycium barbarum	2	gene-LOC132617133, gene-LOC132623353
Solanaceae	Solanum chilense	2	SOLCI002057000, SOLCI004488900
Solanaceae	Solanum pennellii	2	gene-LOC107011002, gene-LOC107014456
Tamaricaceae	Reaumuria soongarica	1	STRG.27883_chr04_+
Tamaricaceae	Tamarix chinensis	1	TC02G2853
Zosteraceae	Zostera marina	1	Zosma01g03440.v3.1