Basic Information
Locus ID:
Pt_Chr0605019
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 153588639 | 153592533 | + | Pt_Chr0605019 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 28,581.45 Da | 46.69 | 73.33 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 78 | 255 | 7.47729E-91 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 80 | 184 | 4.7E-14 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 81 | 211 | 2.09E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 60 | 257 | 2.8E-65 | - |
| SMART | SM00232 | pad1_6 | 80 | 208 | 2.4E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 81 | 209 | 26.625874 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_044976553.1 | AMSH-like ubiquitin thioesterase 2 isoform X3 [Hordeum vulgare subsp. vulgare] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A287L8P8 | Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology