Basic Information
Locus ID:
Pt_Chr0604974
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 152048323 | 152057342 | - | Pt_Chr0604974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 133,179.70 Da | 48.34 | 76.10 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 634 | 766 | 2.21584E-69 | - |
| CDD | cd17920 | DEXHc_RecQ | 443 | 633 | 4.75031E-94 | - |
| Pfam | PF09382 | RQC domain | 850 | 964 | 3.3E-18 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 454 | 605 | 6.6E-16 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 768 | 843 | 6.3E-16 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 998 | 1063 | 4.7E-13 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 653 | 756 | 9.2E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 632 | 893 | 1.0E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 427 | 775 | 5.22E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 989 | 1068 | 5.45E-15 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 850 | 960 | 5.4E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 634 | 845 | 1.1E-63 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 988 | 1071 | 6.3E-21 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 412 | 633 | 2.4E-82 | IPR027417 |
| SMART | SM00956 | RQC_2 | 852 | 962 | 6.5E-16 | IPR018982 |
| SMART | SM00487 | ultradead3 | 448 | 642 | 2.4E-23 | IPR014001 |
| SMART | SM00490 | helicmild6 | 676 | 757 | 7.3E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 444 | 903 | 1.2E-153 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 992 | 1073 | 18.33308 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 666 | 704 | 9.156826 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 460 | 626 | 20.927305 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 651 | 805 | 19.919994 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 576 | 585 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1071 | 1086 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1071 | 1111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 361 | - | - |
| Coils | Coil | Coil | 311 | 331 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_037477862.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Triticum dicoccoides] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6C7B5 | DNA helicase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology