Basic Information
Locus ID:
Pt_Chr0604848
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 145086560 | 145089833 | - | Pt_Chr0604848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 36,501.37 Da | 33.25 | 90.31 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 209 | 298 | 6.7137E-45 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 205 | 1.6E-37 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 211 | 289 | 1.4E-22 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 26 | 213 | 4.02E-50 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 71 | 323 | 3.12E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 18 | 210 | 1.6E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 211 | 327 | 2.8E-31 | IPR027417 |
| SMART | SM00487 | ultradead3 | 53 | 234 | 1.3E-35 | IPR014001 |
| SMART | SM00490 | helicmild6 | 211 | 289 | 4.9E-29 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 210 | 18.990786 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.28114 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 176 | 328 | 19.287613 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 181 | 189 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_047082958.1 | eukaryotic initiation factor 4A-III homolog A [Lolium rigidum] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UVJ2 | Helicase ATP-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19088 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology