Basic Information
Locus ID:
Pt_Chr0604834
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 144874655 | 144875482 | - | Pt_Chr0604834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 28,543.38 Da | 32.41 | 89.18 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 17 | 222 | 2.0E-58 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 9 | 254 | 2.49E-44 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 8 | 181 | 5.0E-47 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 182 | 257 | 1.4E-32 | IPR016139 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 18 | 31 | 6.9E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 170 | 190 | 6.9E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 70 | 85 | 6.9E-7 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004975022.1 | ribosome-inactivating protein [Setaria italica] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | K3Y9I9 | rRNA N-glycosylase OS=Setaria italica OX=4555 GN=101758994 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology