Basic Information
Locus ID:
Pt_Chr0604820
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein FAR1-RELATED SEQUENCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 144514807 | 144520535 | - | Pt_Chr0604820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 96,540.69 Da | 38.53 | 72.63 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10551 | MULE transposase domain | 303 | 396 | 7.2E-26 | IPR018289 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 102 | 181 | 3.2E-8 | IPR004330 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 790 | 841 | 4.04E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 788 | 846 | 5.4E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 795 | 811 | 0.24 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 824 | 840 | 0.17 | IPR001878 |
| SMART | SM00575 | 26again6 | 598 | 625 | 0.0048 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 587 | 623 | 9.767181 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 787 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38180.1 | FAR1-related sequence 5. | 0 |
| RefSeq | XP_047061189.1 | protein FAR1-RELATED SEQUENCE 5-like [Lolium rigidum] | 0 |
| Q9SZL8 | Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7UFU0 | Protein FAR1-RELATED SEQUENCE OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology