Basic Information
Locus ID:
Pt_Chr0604814
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 144437340 | 144438698 | + | Pt_Chr0604814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 50,954.83 Da | 44.87 | 83.96 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 295 | 332 | 4.6E-8 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 46 | 1.05E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 49 | 5.9E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 406 | 446 | 2.6E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051228793.1 | uncharacterized protein LOC127346541 [Lolium perenne] | 0 |
| TrEMBL | A0A3B6PTA4 | DUF295 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.2HG0105960.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 23 | gene-QYE76_005955, gene-QYE76_007209, gene-QYE76_007223 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G030920 |
| Poaceae | Puccinellia tenuiflora | 29 | Pt_Chr0106145, Pt_Chr0106146, Pt_Chr0106147, Pt_Chr0106148 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G714100, Tel3E01G083700, Tel3E01G849800 ... |
| Poaceae | Triticum dicoccoides | 16 | gene_TRIDC2AG006540, gene_TRIDC2BG007550 ... |
| Poaceae | Triticum aestivum | 22 | TraesCS2A02G419700.1.cds1, TraesCS2B02G438800.1.cds1 ... |