Basic Information
Locus ID:
Pt_Chr0604807
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 144335765 | 144337212 | + | Pt_Chr0604807 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 49,771.16 Da | 50.16 | 99.73 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 337 | 444 | 3.8E-15 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 31 | 148 | 1.46E-5 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 192 | 278 | 7.32E-13 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 317 | 444 | 4.32E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 214 | 304 | 2.8E-10 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 152 | 213 | 4.6E-5 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 149 | 3.3E-6 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 311 | 451 | 7.0E-26 | IPR011333 |
| SMART | SM00225 | BTB_4 | 338 | 446 | 1.1E-12 | IPR000210 |
| SMART | SM00225 | BTB_4 | 193 | 280 | 0.29 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 338 | 405 | 14.252943 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047057684.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0B4SVI9 | BTB containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0206757, Pt_Chr0604801, Pt_Chr0604803, Pt_Chr0604807 ... |