Basic Information
Locus ID:
Pt_Chr0604803
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 143971430 | 143972089 | + | Pt_Chr0604803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 24,499.45 Da | 39.71 | 108.22 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14733 | BACK | 176 | 215 | 3.34534E-4 | - |
| Pfam | PF00651 | BTB/POZ domain | 63 | 173 | 2.7E-15 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 46 | 203 | 2.89E-21 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 36 | 204 | 2.5E-35 | IPR011333 |
| SMART | SM00225 | BTB_4 | 67 | 175 | 1.7E-11 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 67 | 134 | 13.901349 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047057684.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077RUX8 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF012500090CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0206757, Pt_Chr0604801, Pt_Chr0604803, Pt_Chr0604807 ... |