Basic Information
Locus ID:
Pt_Chr0604800
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 143967220 | 143969298 | + | Pt_Chr0604800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.31 | 70,660.31 Da | 51.45 | 89.07 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 332 | 457 | 2.43624E-10 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 167 | 235 | 2.1E-6 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 484 | 587 | 8.7E-17 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 471 | 588 | 1.13E-21 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 165 | 236 | 5.65E-8 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 328 | 463 | 4.25E-15 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 461 | 618 | 1.1E-37 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 329 | 460 | 4.7E-10 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 140 | 239 | 2.5E-10 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 240 | 319 | 3.2E-9 | - |
| SMART | SM00225 | BTB_4 | 99 | 238 | 0.25 | IPR000210 |
| SMART | SM00225 | BTB_4 | 493 | 589 | 7.2E-15 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 493 | 556 | 12.701794 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 331 | 456 | 10.26542 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040259309.1 | BTB/POZ and MATH domain-containing protein 1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q7T330 | Speckle-type POZ protein OS=Danio rerio OX=7955 GN=spop PE=2 SV=1 | 0 | |
| TrEMBL | A0A077RSJ6 | Speckle-type POZ protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF045600080CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0712650 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219660.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_000351, gene-QYE76_018036, gene-QYE76_020460 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0100491, Pt_Chr0106602, Pt_Chr0206622, Pt_Chr0206755 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G840100 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG009110, gene_TRIDC3AG071980 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G009700.1.cds1, TraesCS3A02G076600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb418740_P001 |