Basic Information
Locus ID:
Pt_Chr0604613
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein serine/threonine kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 139693954 | 139698592 | - | Pt_Chr0604613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 67,984.05 Da | 36.29 | 73.87 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 289 | 570 | 1.1E-50 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 154 | 238 | 3.2E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 40 | 139 | 4.4E-18 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 285 | 572 | 2.32E-69 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 364 | 585 | 7.0E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 269 | 363 | 9.3E-24 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 145 | 241 | 5.1E-15 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 32 | 142 | 2.1E-22 | IPR038408 |
| SMART | SM00220 | serkin_6 | 287 | 578 | 7.2E-32 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 143 | 241 | 9.898922 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 287 | 579 | 39.467087 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 34 | 142 | 18.20875 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 293 | 315 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 422 | 434 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 612 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 20. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_051180684.1 | cysteine-rich receptor-like protein kinase 19 [Lolium perenne] | 0 |
| O65479 | Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=CRK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6U3R7 | Cysteine-rich receptor-like protein kinase 25 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH05.601, CH01.3028, CH04.309 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_003593, gene-QYE76_017906, gene-QYE76_019077 ... |
| Poaceae | Oryza coarctata | 1 | Oco09G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g10540.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G170900, gene-BS78_08G007300 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0106389, Pt_Chr0106422, Pt_Chr0501231, Pt_Chr0604613 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G007730, Chr13G017140 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G497600, Tel2E01G092800, Tel2E01G1016400 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2B02G628100.1, TraesCS2B02G628200.1 ... |