Basic Information
Locus ID:
Pt_Chr0604609
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
23S rRNA (adenine(1618)-N(6))-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 139597578 | 139607087 | - | Pt_Chr0604609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 147,454.89 Da | 53.21 | 89.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 721 | 753 | 3.8E-4 | IPR001810 |
| Pfam | PF00646 | F-box domain | 13 | 42 | 2.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 718 | 761 | 6.41E-10 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 127 | 1005 | 2.14E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 50 | 6.93E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 704 | 760 | 4.3E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 49 | 5.7E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 857 | 1067 | 3.9E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 110 | 340 | 2.9E-9 | IPR032675 |
| SMART | SM00256 | fbox_2 | 724 | 764 | 0.0027 | IPR001810 |
| SMART | SM00256 | fbox_2 | 13 | 54 | 5.5E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 718 | 765 | 10.795695 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 54 | 11.166616 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 710 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 719 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54820.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_051191967.1 | uncharacterized protein LOC127305533 [Lolium perenne] | 0 |
| TrEMBL | A0A3B6LHK0 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0604604, Pt_Chr0604609, Pt_Chr0605670, Pt_Chr0605675 |