Basic Information
Locus ID:
Pt_Chr0604604
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
23S rRNA (adenine(1618)-N(6))-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 139559311 | 139579361 | + | Pt_Chr0604604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 177,562.23 Da | 47.02 | 95.02 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 513 | 547 | 2.2E-4 | IPR001810 |
| Pfam | PF00646 | F-box domain | 1009 | 1043 | 3.9E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 1155 | 1354 | 1.96E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 661 | 873 | 1.92E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 51 | 5.89E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 157 | 359 | 6.02E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 509 | 553 | 1.28E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 1006 | 1045 | 4.45E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 626 | 865 | 5.5E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1120 | 1367 | 9.1E-13 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 500 | 552 | 1.0E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 352 | 4.2E-8 | IPR032675 |
| SMART | SM00256 | fbox_2 | 14 | 55 | 3.1 | IPR001810 |
| SMART | SM00256 | fbox_2 | 1013 | 1053 | 0.9 | IPR001810 |
| SMART | SM00256 | fbox_2 | 516 | 557 | 0.0032 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 55 | 9.073559 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 510 | 557 | 10.557245 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1007 | 1043 | 10.371784 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52680.2 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_047080252.1 | uncharacterized protein LOC124690995 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6LHK0 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0604604, Pt_Chr0604609, Pt_Chr0605670, Pt_Chr0605675 |