Basic Information
Locus ID:
Pt_Chr0604597
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 139421762 | 139431219 | - | Pt_Chr0604597 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 112,160.40 Da | 56.31 | 76.88 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 232 | 389 | 1.83429E-40 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 964 | 1005 | 6.76645E-25 | - |
| Pfam | PF00069 | Protein kinase domain | 682 | 870 | 3.4E-25 | IPR000719 |
| Pfam | PF04564 | U-box domain | 960 | 1029 | 7.0E-17 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 660 | 868 | 1.89E-39 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 957 | 1029 | 1.41E-23 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 236 | 353 | 2.6E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 226 | 357 | 7.0E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 657 | 746 | 2.1E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 959 | 1032 | 1.1E-26 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 747 | 937 | 1.2E-22 | - |
| SMART | SM00504 | Ubox_2 | 963 | 1026 | 5.4E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 959 | 1033 | 36.684883 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 675 | 929 | 22.506287 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 437 | - | - |
| Coils | Coil | Coil | 540 | 560 | - | - |
| Coils | Coil | Coil | 568 | 602 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_051191961.1 | U-box domain-containing protein 33-like [Lolium perenne] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6MRK8 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.3789, BH07.3609, CH07.316, CH07.3685 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151050, gene-QOZ80_2BG0206470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037771 |
| Poaceae | Oryza coarctata | 2 | Oco03G025760, Oco04G026230 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G324800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604597, Pt_Chr0605662 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026650, Chr13G000470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G339600, Tel5E01G341900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG032910, gene_TRIDC5AG033150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G203900.1, TraesCS5A02G205800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190970_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39767, nbis-gene-8270 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17452 |