Basic Information
Locus ID:
Pt_Chr0604587
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 139097840 | 139103507 | - | Pt_Chr0604587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 86,621.54 Da | 64.47 | 65.28 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 720 | 760 | 1.0498E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 718 | 765 | 1.9E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 712 | 766 | 8.24E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 708 | 771 | 2.0E-13 | IPR013083 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 294 | 322 | 6.6319 | IPR000048 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 721 | 760 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 355 | - | - |
| Coils | Coil | Coil | 84 | 104 | - | - |
| Coils | Coil | Coil | 474 | 494 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051191949.1 | uncharacterized protein LOC127305521 isoform X3 [Lolium perenne] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NVJ5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology