Basic Information
Locus ID:
Pt_Chr0604586
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 139096991 | 139097491 | + | Pt_Chr0604586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 16,684.36 Da | 59.92 | 90.90 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 105 | 152 | 5.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 155 | 1.36E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 158 | 1.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 105 | 151 | 9.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 105 | 152 | 12.518784 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051196549.1 | E3 ubiquitin-protein ligase EL5-like [Lolium perenne] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6Z560 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0631650.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_026813, gene-QYE76_026863 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604586 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG059480, gene_TRIDC6BG070480 |
| Poaceae | Triticum aestivum | 2 | TraesCS6B02G449700.1.cds1, TraesCS6D02G389000.1.cds1 |