Basic Information
Locus ID:
Pt_Chr0604534
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 137705371 | 137711844 | + | Pt_Chr0604534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 115,947.86 Da | 52.88 | 69.89 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 450 | 487 | 4.8E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 12 | 45 | 6.4E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 66 | 9.29E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 450 | 575 | 3.4E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 51 | 8.1E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 450 | 487 | 5.0E-6 | - |
| SMART | SM00256 | fbox_2 | 451 | 491 | 2.1E-6 | IPR001810 |
| SMART | SM00256 | fbox_2 | 11 | 51 | 0.0018 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 912 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 916 | - | - |
| Coils | Coil | Coil | 881 | 908 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044417086.1 | uncharacterized protein LOC123142139 [Triticum aestivum] | 0 |
| TrEMBL | A0A3B6QKP1 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0316550, gene-QOZ80_4BG0347750 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0414150.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 17 | gene-QYE76_026431, gene-QYE76_026432, gene-QYE76_026433 ... |
| Poaceae | Oryza coarctata | 2 | Oco07G006550, Oco11G007950 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G105400 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0100957, Pt_Chr0108093, Pt_Chr0108094, Pt_Chr0604534 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G012460, Chr26G007060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G588900, Tel6E01G732600 |
| Poaceae | Triticum aestivum | 17 | TraesCS3A02G500300.1, TraesCS3A02G500800.1.cds1 ... |