Basic Information
Locus ID:
Pt_Chr0604343
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 133329134 | 133338008 | + | Pt_Chr0604343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 85,067.61 Da | 43.34 | 69.92 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 526 | 786 | 1.2802E-56 | - |
| Pfam | PF08513 | LisH | 98 | 123 | 1.4E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 548 | 579 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 752 | 786 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 586 | 623 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 670 | 703 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 526 | 786 | 1.43E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 501 | 634 | 1.1E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 635 | 786 | 7.2E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 706 | 745 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 4.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 665 | 703 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 747 | 786 | 3.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 626 | 662 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 579 | 4.4E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 547 | 579 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 754 | 786 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 547 | 579 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 754 | 786 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 672 | 712 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 590 | 632 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 590 | 624 | 8.65015 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 96 | 128 | 9.035233 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 483 | - | - |
| Coils | Coil | Coil | 167 | 187 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_044955108.1 | transcriptional corepressor LEUNIG_HOMOLOG [Hordeum vulgare subsp. vulgare] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A287V4H4 | Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology