Basic Information
Locus ID:
Pt_Chr0604258
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 131283076 | 131286930 | + | Pt_Chr0604258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 74,458.28 Da | 50.93 | 77.16 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 475 | 659 | 3.1E-27 | IPR025886 |
| Pfam | PF12937 | F-box-like | 381 | 424 | 1.0E-5 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 161 | 301 | 1.7E-16 | IPR025886 |
| Pfam | PF00646 | F-box domain | 10 | 50 | 0.0011 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 371 | 450 | 5.89E-13 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 78 | 6.28E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 50 | 4.0E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 380 | 422 | 3.0E-7 | - |
| SMART | SM00256 | fbox_2 | 384 | 424 | 0.0017 | IPR001810 |
| SMART | SM00256 | fbox_2 | 12 | 52 | 0.0011 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 378 | 424 | 11.219605 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 52 | 9.312009 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02360.1 | phloem protein 2-B10. | 0 |
| RefSeq | XP_051191785.1 | F-box protein PP2-B11-like [Lolium perenne] | 0 |
| Q9ZVQ6 | F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QMX5 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0628430.1, HORVU.MOREX.r3.6HG0628490.1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_019544, gene-QYE76_026337, gene-QYE76_026338 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604258, Pt_Chr0604322 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G692400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG056840, gene_TRIDC6BG066470 |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G082500.1, TraesCS3B02G097600.1 ... |