Basic Information
Locus ID:
Pt_Chr0604229
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 130442171 | 130446478 | + | Pt_Chr0604229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 112,427.09 Da | 43.95 | 69.47 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 639 | 1040 | 3.45E-13 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 640 | 1010 | 2.8E-8 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 150 | - | - |
| Coils | Coil | Coil | 426 | 446 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14310.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_047078385.1 | KIN14B-interacting protein At4g14310 [Lolium rigidum] | 0 |
| F4JUQ2 | KIN14B-interacting protein At4g14310 OS=Arabidopsis thaliana OX=3702 GN=At4g14310 PE=1 SV=1 | 0 | |
| TrEMBL | F2ELW4 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12727, jg5819 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3014 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018269 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37873, Sbi_jg6035 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28180 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006131 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00944, Sgl05898, Sgl06021 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000031481, gene:ENSEOMG00000045871 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0008380, CQ.Regalona.r1.3BG0008510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30239410 |
| Apiaceae | Apium graveolens | 3 | Ag6G01990, Ag8G01471, AgUnG00236 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011760, COCNU_09G009770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706930, gene-LOC103721711 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.120.V1.1, AsparagusV1_10.1934.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G25018, Ftri12G06837 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14310.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024359m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1075 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1128 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03930 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g01460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12107 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.778 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022760 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11638, Lb2G11645 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3904, BH07.3713, CH07.3773 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0204270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026710 |
| Poaceae | Oryza coarctata | 2 | Oco03G024910, Oco04G025410 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G314900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604229 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G016920, Chr0G014040, Chr13G001160, Chr15G001050 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G687600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG056520, gene_TRIDC6BG066070 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G379900.1, TraesCS6B02G418500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb191660_P001, Zm00001eb258510_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8352 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14674 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1411 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.887 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15793 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11822, nbisL1-mrna-6645 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-757 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.549 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008183 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15214 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4284 |
| Salicaceae | Populus euphratica | 2 | populus_peu07545, populus_peu21564 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609473 |
| Solanaceae | Solanum chilense | 1 | SOLCI000183300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031700 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14164_chr08_+, STRG.7914_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1733 |