Basic Information
Locus ID:
Pt_Chr0604135
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 127619382 | 127623572 | - | Pt_Chr0604135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 106,444.80 Da | 33.20 | 104.10 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 94 | 155 | 2.5E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 693 | 916 | 1.6E-42 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 1.1E-10 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 337 | 608 | 5.49E-46 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 75 | 421 | 2.25E-65 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 683 | 970 | 2.46E-72 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 186 | 2.4E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 335 | 622 | 2.1E-74 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 658 | 777 | 1.6E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 266 | 2.5E-16 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 778 | 988 | 1.5E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 267 | 334 | 7.5E-16 | IPR032675 |
| SMART | SM00220 | serkin_6 | 691 | 985 | 6.0E-38 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 691 | 985 | 37.71447 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 822 | 834 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 697 | 720 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_044348232.1 | receptor-like protein kinase HSL1 [Triticum aestivum] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | W5CXY8 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF115300010CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology