Basic Information
Locus ID:
Pt_Chr0604105
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 126805811 | 126806299 | - | Pt_Chr0604105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 17,978.38 Da | 75.39 | 82.53 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 107 | 149 | 3.42376E-17 | - |
| Pfam | PF13639 | Ring finger domain | 107 | 149 | 2.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 152 | 1.01E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 151 | 2.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 107 | 148 | 3.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 107 | 149 | 10.409105 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35480.1 | RING-H2 finger A3B. Encodes a putative RING-H2 finger protein RHA3b. | 0 |
| RefSeq | XP_051205226.1 | RING-H2 finger protein ATL2-like [Lolium perenne] | 0 |
| Q9ZT49 | Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6JIR1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G00766 |
| Poaceae | Echinochloa crus-galli | 7 | AH04.1990, AH04.2286, AH06.708, BH04.2231, BH04.2361 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0693130, gene-QOZ80_9BG0718900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0358530.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_014638, gene-QYE76_051889, gene-QYE76_051890 ... |
| Poaceae | Oryza coarctata | 2 | Oco21G010090, Oco22G011410 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g47690.1, LOC_Os11g47700.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_03G351000, gene-BS78_05G282700, gene-BS78_K266700 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604105 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G003990, Chr17G003690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G221800, Tel4E01G222000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG028170, gene_TRIDC4BG022390 |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G174400.1.cds1, TraesCS4A02G174500.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb091480_P001, Zm00001eb164680_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18460, nbis-gene-45969 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18288, Zma_g18289, Zma_g19157 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.763 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9472 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21882 |