Basic Information
Locus ID:
Pt_Chr0604099
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
XH domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 126517811 | 126523459 | - | Pt_Chr0604099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 79,459.34 Da | 39.98 | 71.68 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03468 | XS domain | 179 | 289 | 3.0E-21 | IPR005380 |
| Pfam | PF03470 | XS zinc finger domain | 76 | 119 | 5.6E-20 | IPR005381 |
| Pfam | PF03469 | XH domain | 568 | 694 | 8.0E-51 | IPR005379 |
| Gene3D | G3DSA:3.30.70.2890 | XS domain | 176 | 344 | 1.5E-29 | IPR038588 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 51 | - | - |
| Coils | Coil | Coil | 322 | 370 | - | - |
| Coils | Coil | Coil | 453 | 493 | - | - |
| Coils | Coil | Coil | 379 | 448 | - | - |
| Coils | Coil | Coil | 509 | 546 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15910.1 | XH/XS domain-containing protein. | 0 |
| RefSeq | XP_020151775.1 | factor of DNA methylation 1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9S9P3 | Factor of DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=FDM1 PE=1 SV=1 | 0 | |
| TrEMBL | N1R3S3 | Factor of DNA methylation 4 OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_04G016040 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.675, BH02.677, CH02.776 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0009660, gene-QOZ80_1BG0058260 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0251850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041886 |
| Poaceae | Oryza coarctata | 1 | Oco12G005280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g05470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G065500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604099, Pt_Chr0605359 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G023530, Chr03G004270, Chr05G014410, Chr08G000860 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G297600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG022930, gene_TRIDC3BG027120 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G167400.1, TraesCS3B02G198800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb124430_P001, Zm00001eb335860_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13017 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7599 |