Basic Information
Locus ID:
Pt_Chr0604056
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 125392697 | 125402644 | + | Pt_Chr0604056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 128,624.30 Da | 42.09 | 75.56 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 510 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 947 | 979 | 0.0086 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 514 | 1128 | 4.94E-41 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 371 | 688 | 4.23E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 769 | 996 | 2.0E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 561 | 4.7E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 689 | 2.4E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 997 | 1135 | 6.4E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 858 | 895 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 646 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 510 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 599 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1036 | 1072 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 941 | 980 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 463 | 22.0 | IPR001680 |
| SMART | SM00667 | Lish | 39 | 71 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1095 | 1127 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 402 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 898 | 938 | 2.2 | IPR001680 |
| SMART | SM00668 | ctlh | 69 | 127 | 7.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 512 | 553 | 0.0031 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 39 | 71 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 476 | 511 | 8.676514 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 948 | 979 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 624 | 655 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 948 | 979 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 69 | 127 | 13.415294 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 369 | 411 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 476 | 511 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 497 | 511 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1128 | 1166 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_047072561.1 | protein TPR1 isoform X1 [Lolium rigidum] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | I1HE01 | Topless-related protein 3-like OS=Brachypodium distachyon OX=15368 GN=100834097 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology