Basic Information
Locus ID:
Pt_Chr0603578
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 110011325 | 110020326 | - | Pt_Chr0603578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 61,897.33 Da | 56.63 | 78.66 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 378 | 552 | 2.06696E-103 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 376 | 481 | 6.1E-16 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 56 | 151 | 1.5E-10 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 378 | 507 | 2.09E-19 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 68 | 170 | 8.37E-5 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 365 | 554 | 1.9E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 40 | 180 | 2.0E-26 | - |
| SMART | SM00232 | pad1_6 | 377 | 505 | 1.2E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 377 | 508 | 24.963499 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 194 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_051209866.1 | AMSH-like ubiquitin thioesterase 3 isoform X2 [Lolium perenne] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | I1HF61 | MPN domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100827373 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology