Basic Information
Locus ID:
Pt_Chr0603479
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 99928441 | 99933385 | + | Pt_Chr0603479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 88,893.46 Da | 38.78 | 92.70 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 510 | 643 | 4.83774E-23 | - |
| Pfam | PF17862 | AAA+ lid domain | 665 | 703 | 1.7E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 512 | 642 | 9.9E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 470 | 700 | 3.58E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 644 | 716 | 7.2E-93 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 472 | 643 | 7.2E-93 | IPR027417 |
| SMART | SM00382 | AAA_5 | 508 | 645 | 9.0E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 615 | 634 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 701 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 701 | 745 | - | - |
| Coils | Coil | Coil | 697 | 717 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_051225046.1 | peroxisomal ATPase pex6-like isoform X2 [Lolium perenne] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | I1HPJ7 | AAA domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100836955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology