Basic Information
Locus ID:
Pt_Chr0603331
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 94556877 | 94560764 | - | Pt_Chr0603331 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 45,360.63 Da | 55.38 | 77.33 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 322 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 282 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 161 | 5.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 125 | 411 | 2.32E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 102 | 186 | 3.0E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 422 | 6.9E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 245 | 282 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 410 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 322 | 7.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 238 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 170 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 252 | 285 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 166 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 291 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 292 | 331 | 8.570195 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 269 | 283 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 8.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 269 | 283 | 8.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 148 | 162 | 8.5E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 117 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_020154742.1 | zinc finger CCCH domain-containing protein 17 [Aegilops tauschii subsp. strangulata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6EFP1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology