Basic Information
Locus ID:
Pt_Chr0603245
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 91411431 | 91412153 | - | Pt_Chr0603245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 25,805.65 Da | 53.93 | 73.00 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 166 | 228 | 3.24325E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 165 | 227 | 1.9E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 85 | 144 | 1.8E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 68 | 228 | 4.03E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 18 | 154 | 9.1E-17 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 159 | 234 | 8.7E-24 | - |
| SMART | SM00054 | efh_1 | 123 | 151 | 0.25 | IPR002048 |
| SMART | SM00054 | efh_1 | 86 | 114 | 0.029 | IPR002048 |
| SMART | SM00054 | efh_1 | 166 | 194 | 6.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 202 | 230 | 1.5E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 82 | 117 | 13.258112 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 119 | 154 | 10.719631 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 162 | 197 | 14.959732 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 198 | 233 | 13.620752 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 95 | 107 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 211 | 223 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 132 | 144 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 175 | 187 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_044344641.1 | probable calcium-binding protein CML14 [Triticum aestivum] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6FM77 | Calcium-binding protein CML11 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology