Basic Information
Locus ID:
Pt_Chr0603197
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
CBL04
Description:
EF-hand, calcium binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 89674107 | 89678392 | + | Pt_Chr0603197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 21,428.96 Da | 50.87 | 80.32 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 80 | 145 | 1.5406E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 79 | 149 | 8.3E-9 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 39 | 66 | 0.028 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 42 | 175 | 3.21E-30 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 23 | 183 | 1.2E-47 | - |
| SMART | SM00054 | efh_1 | 43 | 71 | 18.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 80 | 108 | 5.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 124 | 152 | 0.16 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 120 | 155 | 10.747526 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 39 | 74 | 11.305434 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 76 | 111 | 11.556493 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 133 | 145 | - | IPR018247 |
| PRINTS | PR00450 | Recoverin family signature | 94 | 112 | 5.7E-8 | - |
| PRINTS | PR00450 | Recoverin family signature | 140 | 160 | 5.7E-8 | - |
| PRINTS | PR00450 | Recoverin family signature | 47 | 68 | 5.7E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04010 (MAPK signaling pathway)
map04010 (MAPK signaling pathway)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04370 (VEGF signaling pathway)
map04370 (VEGF signaling pathway)
map04650 (Natural killer cell mediated cytotoxicity)
map04658 (Th1 and Th2 cell differentiation)
map04659 (Th17 cell differentiation)
map04660 (T cell receptor signaling pathway)
map04662 (B cell receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24270.3 | - | 0 |
| RefSeq | XP_047059129.1 | calcineurin B-like protein 5 isoform X2 [Lolium rigidum] | 0 |
| Q3HRP2 | Calcineurin B-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0SNS7 | Calcineurin B-like protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG385300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology