Basic Information
Locus ID:
Pt_Chr0602973
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 81148273 | 81153137 | + | Pt_Chr0602973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.15 | 91,291.90 Da | 77.96 | 63.40 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 372 | 501 | 9.25636E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 383 | 492 | 8.9E-35 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 177 | 346 | 7.9E-50 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 509 | 1.13E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 11 | 49 | 8.56E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 364 | 534 | 1.1E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 127 | 363 | 8.1E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 172 | 375 | 2.7E-64 | IPR014001 |
| SMART | SM00490 | helicmild6 | 412 | 492 | 4.7E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 15 | 48 | 0.0018 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 387 | 531 | 25.740913 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 153 | 181 | 10.305127 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 14 | 48 | 10.521601 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 358 | 30.917984 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 20 | 46 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 304 | 312 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 109 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_047054169.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Lolium rigidum] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | I1HNG4 | DEAD-box ATP-dependent RNA helicase 14 OS=Brachypodium distachyon OX=15368 GN=100822322 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology