Basic Information
Locus ID:
Pt_Chr0602932
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 79291787 | 79293867 | - | Pt_Chr0602932 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 70,712.84 Da | 46.94 | 87.88 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 344 | 510 | 2.7E-20 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 148 | 209 | 1.7E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 5.1E-8 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 344 | 609 | 7.3E-41 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 220 | 3.4E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 120 | 243 | 1.0E-33 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 305 | 433 | 9.2E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 119 | 1.6E-9 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 434 | 629 | 1.7E-33 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 340 | 612 | 23.156452 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 652 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68400.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_047059918.1 | probable leucine-rich repeat receptor-like protein kinase At1g68400 [Lolium rigidum] | 0 |
| Q9M9C5 | Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana OX=3702 GN=At1g68400 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6GUQ9 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag7G01865 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G001680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712875 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.466.V1.1 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.885, evm.TU.LG07.911 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2938, BH02.3022, CH02.3505 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0030780, gene-QOZ80_1BG0080730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0284310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054866 |
| Poaceae | Oryza coarctata | 2 | Oco01G018590, Oco02G018910 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g51400.1, LOC_Os02g16790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G252900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602932 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G014760, Chr08G014820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G421700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG037470, gene_TRIDC3BG041890 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G250300.1, TraesCS3B02G279800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb361320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12723 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.711 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8875 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8960 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.497 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014661 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3889 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8007 |
| Salicaceae | Populus euphratica | 2 | populus_peu05046, populus_peu12649 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600362 |
| Solanaceae | Solanum chilense | 1 | SOLCI000709700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003077 |