Basic Information
Locus ID:
Pt_Chr0602796
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 75861708 | 75867318 | - | Pt_Chr0602796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 96,312.26 Da | 51.58 | 77.61 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 733 | 766 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 639 | 673 | 0.0057 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 551 | 867 | 1.68E-49 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 107 | 329 | 3.4E-13 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 106 | 333 | 1.0E-19 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 526 | 871 | 1.6E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 633 | 673 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 728 | 766 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 830 | 869 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 630 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 580 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 685 | 724 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 775 | 814 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 640 | 675 | 9.388329 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 735 | 768 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 735 | 775 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 640 | 675 | 11.210233 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 617 | 631 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 753 | 767 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 660 | 674 | 9.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 617 | 631 | 9.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 753 | 767 | 9.7E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 105 | - | - |
| Coils | Coil | Coil | 334 | 354 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_044976943.1 | protein SPA1-RELATED 4-like isoform X1 [Hordeum vulgare subsp. vulgare] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EMF8 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology