Basic Information
Locus ID:
Pt_Chr0602795
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 75837129 | 75840359 | - | Pt_Chr0602795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 31,149.69 Da | 40.45 | 82.95 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 173 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 233 | 266 | 0.0027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 156 | 287 | 2.96E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 131 | 288 | 1.6E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 139 | 173 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 224 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 228 | 266 | 5.5E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 160 | 175 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 235 | 268 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 235 | 268 | 10.284687 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 253 | 267 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 160 | 174 | 8.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 253 | 267 | 8.3E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.4 | - | 0 |
| RefSeq | XP_051225779.1 | protein SPA1-RELATED 4-like isoform X1 [Lolium perenne] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EMF8 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology