Basic Information
Locus ID:
Pt_Chr0602638
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 71328036 | 71328767 | + | Pt_Chr0602638 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 24,777.79 Da | 72.07 | 79.30 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 111 | 154 | 3.31436E-16 | - |
| Pfam | PF13639 | Ring finger domain | 111 | 154 | 1.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 162 | 4.29E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 159 | 1.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 112 | 153 | 6.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 112 | 154 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 196 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047060542.1 | RING-H2 finger protein ATL2-like [Lolium rigidum] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6XXK2 | RING-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005980, COCNU_14G003980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709527 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3292, BH02.3671, CH02.3207 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0083760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0289690.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055187 |
| Poaceae | Oryza coarctata | 2 | Oco01G020540, Oco02G021080 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g55110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G280000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602638 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G009350, Chr05G024150, Chr08G016490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G479400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG043390, gene_TRIDC3AG043400 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G293400.1.cds1, TraesCS3A02G293500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb152830_P001, Zm00001eb370730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11902, nbis-gene-31084 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11169, Zma_g8680 |