Basic Information
Locus ID:
Pt_Chr0602417
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 64395575 | 64407844 | - | Pt_Chr0602417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 139,527.14 Da | 45.98 | 77.04 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 299 | 427 | 2.35551E-19 | - |
| CDD | cd12108 | Hr-like | 650 | 807 | 5.40778E-27 | - |
| CDD | cd12108 | Hr-like | 42 | 168 | 2.43718E-31 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1120 | 1163 | 5.26434E-18 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 296 | 428 | 9.2E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 648 | 808 | 1.4E-8 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 988 | 1063 | 4.3E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1168 | 1225 | 1.0E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 46 | 170 | 9.6E-13 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1054 | 1113 | 6.15E-14 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 980 | 1044 | 1.57E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1119 | 1166 | 1.16E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1116 | 1164 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1192 | 1233 | 6.1E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 645 | 872 | 3.5E-26 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 38 | 188 | 1.9E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 267 | 445 | 1.6E-19 | - |
| SMART | SM00184 | ring_2 | 1121 | 1162 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1053 | 1120 | 29.772579 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1121 | 1162 | 11.235273 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 981 | 1050 | 25.740093 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_047072479.1 | zinc finger protein BRUTUS-like [Lolium rigidum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | F2DJA0 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology