HalophFGD

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Basic Information
Locus ID: Pt_Chr0602367
Species & Taxonomic ID: Puccinellia tenuiflora & 240906
Genome Assembly: GCA_012064385.1
Short Name: GLT1
Description: Glutamine amidotransferases class-II
Maps and Mapping Data
Chromosome Start End Strand ID
Chr06 62922727 62934236 - Pt_Chr0602367
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.56 236,288.34 Da 36.65 83.42 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd02808 GltS_FMN 927 1306 3.134E-159 IPR002932
CDD cd00713 GltS 99 522 0.0 -
CDD cd00982 gltB_C 1354 1603 9.85921E-154 IPR002489
Pfam PF00310 Glutamine amidotransferases class-II 99 527 5.5E-185 IPR017932
Pfam PF01645 Conserved region in glutamate synthase 927 1293 1.6E-152 IPR002932
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1692 1789 1.0E-19 IPR028261
Pfam PF01493 GXGXG motif 1377 1563 3.9E-85 IPR002489
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1802 2127 3.4E-23 IPR023753
Pfam PF04898 Glutamate synthase central domain 575 858 4.9E-112 IPR006982
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 1799 2138 1.07E-57 IPR036188
SUPERFAMILY SSF46548 alpha-helical ferredoxin 1654 1812 5.23E-35 -
SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 99 530 7.12E-149 IPR029055
SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 1345 1611 2.35E-98 IPR036485
SUPERFAMILY SSF51395 FMN-linked oxidoreductases 572 1328 1.55E-252 -
Gene3D G3DSA:3.50.50.60 - 1802 1875 1.0E-12 IPR036188
Gene3D G3DSA:3.50.50.60 - 1905 2071 8.0E-33 IPR036188
Gene3D G3DSA:3.20.20.70 Aldolase class I 910 1345 2.3E-202 IPR013785
Gene3D G3DSA:3.20.20.70 Aldolase class I 553 909 1.5E-132 IPR013785
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 99 539 6.9E-196 IPR029055
Gene3D G3DSA:1.10.1060.10 - 1633 1801 1.2E-40 IPR009051
Gene3D G3DSA:2.160.20.60 - 1350 1621 3.7E-112 IPR036485
TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1655 2140 1.9E-221 IPR006005
PIRSF PIRSF000187 GOGAT 13 2162 0.0 IPR012220
ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 99 504 23.534285 IPR017932
PRINTS PR00419 Adrenodoxin reductase family signature 1947 1961 2.0E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1803 1825 2.0E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1826 1839 2.0E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1869 1879 2.0E-22 -
MobiDBLite mobidb-lite consensus disorder prediction 1 70 - -
MobiDBLite mobidb-lite consensus disorder prediction 1017 1036 - -
Coils Coil Coil 938 958 - -
Coils Coil Coil 705 725 - -
Gene Ontology
Biological Process:
GO:0006537 (glutamate biosynthetic process) GO:0008152 (metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0005506 (iron ion binding) GO:0010181 (FMN binding) GO:0015930 (glutamate synthase activity) GO:0016040 (glutamate synthase (NADH) activity) GO:0016491 (oxidoreductase activity) GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors) GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor) GO:0050660 (flavin adenine dinucleotide binding) GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
KO Term:
K00264 (glutamate synthase (NADH) [EC:1.4.1.14])
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00910 (Nitrogen metabolism) map00910 (Nitrogen metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Reaction:
R00093 (2 L-Glutamate + NAD+ <=> L-Glutamine + 2-Oxoglutarate + NADH + H+) R00114 (2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+) R00248 (L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G53460.1 NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase 0
RefSeq XP_003566997.1 glutamate synthase 1 [NADH], chloroplastic [Brachypodium distachyon] 0
Swiss-Prot Q0JKD0 Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0681900 PE=2 SV=1 0
TrEMBL I1HQF1 glutamate synthase (NADH) OS=Brachypodium distachyon OX=15368 GN=100832857 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg13893, jg2196
Aizoaceae Mesembryanthemum crystallinum 1 gene_3295
Amaranthaceae Atriplex hortensis 1 Ah018647
Amaranthaceae Beta vulgaris 1 BVRB_3g052140
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15107, Sbi_jg55939
Amaranthaceae Salicornia europaea 1 Seu_jg26420
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020044
Amaranthaceae Suaeda glauca 5 Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ...
gene:ENSEOMG00000043885
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920
Anacardiaceae Pistacia vera 1 pistato.v30185180
Apiaceae Apium graveolens 2 Ag10G02525, AgUnG00467
Arecaceae Cocos nucifera 2 COCNU_03G013130, scaffold000561G000020
Arecaceae Phoenix dactylifera 2 gene-LOC103708325, gene-LOC103713334
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.2833.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G12439
Brassicaceae Arabidopsis thaliana 1 AT5G53460.1
Brassicaceae Eutrema salsugineum 1 Thhalv10012414m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp6g15593.v2.2
Brassicaceae Brassica nigra 1 BniB08g016600.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G1606
Casuarinaceae Casuarina glauca 1 Cgl09G1742
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g12650, gene.Cymno12g01560
Dunaliellaceae Dunaliella salina 1 Dusal.0052s00003.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g24920, gene.Thate09g14990
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.2897
Plantaginaceae Plantago ovata 1 Pov_00041146
Plumbaginaceae Limonium bicolor 2 Lb0G37740, Lb7G32942
Poaceae Echinochloa crus-galli 5 AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ...
gene-QOZ80_5AG0363860, gene-QOZ80_5BG0411960
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0280530.1
Poaceae Lolium multiflorum 2 gene-QYE76_054594, gene-QYE76_054602
Poaceae Oryza coarctata 4 Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130
Poaceae Oryza sativa 2 LOC_Os01g48960.1, LOC_Os05g48200.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G233100, gene-BS78_03G236800 ...
gene-BS78_09G229900
Poaceae Puccinellia tenuiflora 1 Pt_Chr0602367
Poaceae Sporobolus alterniflorus 3 Chr02G012560, Chr03G013590, Chr08G013750
Poaceae Thinopyrum elongatum 1 Tel3E01G442300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG039670, gene_TRIDC3BG044820
Poaceae Triticum aestivum 3 TraesCS3A02G266300.1, TraesCS3B02G299800.1 ...
TraesCS3D02G266400.1
Poaceae Zea mays 3 Zm00001eb156610_P002, Zm00001eb295220_P001 ...
Zm00001eb360480_P005
Poaceae Zoysia japonica 2 nbis-gene-12580, nbis-gene-26118
Poaceae Zoysia macrostachya 2 Zma_g10886, Zma_g8437
Portulacaceae Portulaca oleracea 1 evm.TU.LG06.1967
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13790, gene.Posoc09g09130
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-3559, nbisL1-mrna-7507
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-2555, nbisL1-mrna-921
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14013, nbisL1-mrna-5641
Rhizophoraceae Kandelia candel 2 evm.TU.utg000009l.314, evm.TU.utg000012l.386
Rhizophoraceae Kandelia obovata 2 Maker00005974, Maker00011451
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-2744, nbisL1-mrna-8412
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-16769, nbisL1-mrna-743
Salicaceae Populus euphratica 3 populus_peu28067, populus_peu29502, populus_peu29503
Solanaceae Lycium barbarum 1 gene-LOC132632063
Solanaceae Solanum pennellii 1 gene-LOC107013700
Tamaricaceae Reaumuria soongarica 1 gene_5260
Tamaricaceae Tamarix chinensis 1 TC06G1506
Zosteraceae Zostera marina 2 Zosma01g06270.v3.1, Zosma01g22390.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.