Basic Information
Locus ID:
Pt_Chr0602247
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 57704343 | 57708600 | - | Pt_Chr0602247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 110,921.47 Da | 40.24 | 92.83 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 704 | 992 | 1.19736E-90 | - |
| Pfam | PF13855 | Leucine rich repeat | 142 | 199 | 9.8E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 701 | 989 | 1.8E-41 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 287 | 347 | 1.5E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 69 | 127 | 2.4E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 63 | 1.2E-6 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 425 | 586 | 1.57E-27 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 697 | 990 | 7.69E-70 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 72 | 448 | 1.33E-69 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 690 | 783 | 1.4E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 784 | 1011 | 6.9E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 362 | 613 | 2.8E-65 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 175 | 9.5E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 281 | 361 | 9.0E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 176 | 280 | 1.9E-29 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 334 | 358 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 90 | 114 | 74.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 115 | 138 | 160.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 698 | 991 | 2.3E-27 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 164 | 188 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 523 | 547 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 236 | 260 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 310 | 333 | 240.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 698 | 991 | 36.258671 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 842 | 854 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 704 | 731 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 997 | 1044 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_047053165.1 | receptor-like protein kinase HSL1 [Lolium rigidum] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6GTU9 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology