Basic Information
Locus ID:
Pt_Chr0602100
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 53089216 | 53102078 | - | Pt_Chr0602100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 108,965.76 Da | 50.78 | 85.65 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 558 | 592 | 0.0084 | IPR001810 |
| Pfam | PF12937 | F-box-like | 115 | 149 | 3.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 110 | 158 | 3.01E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 555 | 598 | 6.02E-9 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 186 | 843 | 2.75E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 207 | 475 | 1.4E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 637 | 842 | 1.7E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 547 | 622 | 1.4E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 105 | 152 | 3.8E-7 | - |
| SMART | SM00256 | fbox_2 | 116 | 156 | 3.0E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 562 | 602 | 2.2 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 110 | 150 | 9.709425 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54820.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_051226883.1 | F-box/FBD/LRR-repeat protein At1g13570-like [Lolium perenne] | 0 |
| Q9FFU7 | Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis thaliana OX=3702 GN=At5g54820 PE=4 SV=1 | 0 | |
| TrEMBL | A0A077RTU9 | F-box domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF073300090CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH02.3059, AH02.3061, AH06.1307, BH02.3141, BH02.3142 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0031990, gene-QOZ80_1BG0082200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0286570.1, HORVU.MOREX.r3.3HG0286590.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_055442, gene-QYE76_055443, gene-QYE76_055444 ... |
| Poaceae | Oryza coarctata | 3 | Oco01G019960, Oco01G019970, Oco02G019800 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g52970.1, LOC_Os01g52980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G264700 |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0505500, Pt_Chr0506047, Pt_Chr0506051, Pt_Chr0602100 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G010550, Chr03G015420, Chr05G022840, Chr08G015490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G464000, Tel3E01G464100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG041760, gene_TRIDC3AG041770 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G282200.1, TraesCS3A02G282300.1 ... |