Basic Information
Locus ID:
Pt_Chr0602034
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Replication factor-A C terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 51278779 | 51281927 | + | Pt_Chr0602034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 52,351.54 Da | 42.69 | 77.55 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04481 | RPA1_DBD_B_like | 144 | 244 | 1.65629E-9 | - |
| CDD | cd04480 | RPA1_DBD_A_like | 22 | 109 | 3.38075E-17 | - |
| CDD | cd04476 | RPA1_DBD_C | 268 | 395 | 1.56511E-29 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 297 | 394 | 4.6E-12 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 124 | 244 | 5.14E-13 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 264 | 399 | 1.88E-27 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 7 | 120 | 5.14E-12 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 118 | 250 | 1.6E-22 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 6 | 111 | 6.0E-14 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 252 | 417 | 4.6E-32 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 444 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051226973.1 | replication protein A 70 kDa DNA-binding subunit B-like isoform X2 [Lolium perenne] | 0 |
| TrEMBL | A0A8I6Y291 | Rep_fac-A_C domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology