Basic Information
Locus ID:
Pt_Chr0601956
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 49119277 | 49122583 | - | Pt_Chr0601956 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.23 | 21,063.26 Da | 50.39 | 70.54 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 2.04866E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 142 | 9.7E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 148 | 7.94E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 158 | 7.6E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 1.0E-47 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.196629 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 177 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_037423116.1 | ubiquitin-conjugating enzyme E2 4-like [Triticum dicoccoides] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | N1QPE0 | Ubiquitin-conjugating enzyme E2 5 OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology