Basic Information
Locus ID:
Pt_Chr0601925
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
CPK13
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 48475446 | 48482601 | + | Pt_Chr0601925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 60,875.88 Da | 44.24 | 81.70 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 64 | 322 | 3.32258E-134 | - |
| Pfam | PF00069 | Protein kinase domain | 65 | 323 | 2.0E-72 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 441 | 504 | 6.7E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 369 | 429 | 3.0E-11 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 63 | 330 | 1.62E-83 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 351 | 530 | 1.64E-47 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 151 | 331 | 5.3E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 332 | 507 | 3.1E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 67 | 150 | 1.7E-24 | - |
| SMART | SM00054 | efh_1 | 406 | 434 | 0.084 | IPR002048 |
| SMART | SM00054 | efh_1 | 442 | 470 | 2.2E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 65 | 323 | 1.4E-93 | IPR000719 |
| SMART | SM00054 | efh_1 | 370 | 398 | 1.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 478 | 506 | 5.9E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 402 | 437 | 9.21328 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 366 | 401 | 15.712908 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 474 | 509 | 14.597092 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 65 | 323 | 46.067665 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 438 | 473 | 15.182896 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 451 | 463 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 185 | 197 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 487 | 499 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 71 | 94 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 379 | 391 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_003564533.1 | calcium-dependent protein kinase 3 isoform X2 [Brachypodium distachyon] | 0 |
| Q8LPZ7 | Calcium-dependent protein kinase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK3 PE=2 SV=1 | 0 | |
| TrEMBL | I1HT27 | Calcium-dependent protein kinase 30 OS=Brachypodium distachyon OX=15368 GN=100826115 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology