Basic Information
Locus ID:
Pt_Chr0601778
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 44050328 | 44064280 | - | Pt_Chr0601778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 193,221.98 Da | 35.11 | 90.22 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 583 | 848 | 1.66155E-89 | - |
| CDD | cd14066 | STKc_IRAK | 1464 | 1728 | 1.67769E-89 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 910 | 933 | 0.0037 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 4 | 35 | 5.8E-4 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 580 | 847 | 7.4E-48 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1461 | 1726 | 1.3E-46 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1444 | 1736 | 3.78E-77 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 563 | 873 | 2.83E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 342 | 6.8E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 912 | 1197 | 7.99E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 156 | 1.3E-40 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1430 | 1533 | 5.4E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 157 | 355 | 2.0E-33 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1534 | 1746 | 1.2E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 653 | 865 | 1.2E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1038 | 1134 | 4.9E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1135 | 1220 | 9.3E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 902 | 1037 | 2.1E-23 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 551 | 652 | 5.4E-35 | - |
| SMART | SM00369 | LRR_typ_2 | 211 | 234 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 133 | 157 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1161 | 1180 | 220.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1458 | 1731 | 1.3E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 1114 | 1137 | 16.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 577 | 850 | 1.1E-29 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1116 | 1138 | 7.973779 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1458 | 1731 | 38.760387 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 577 | 851 | 38.774521 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 583 | 605 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1464 | 1486 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1577 | 1589 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 697 | 709 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1736 | 1779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1755 | 1773 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_051227121.1 | leucine-rich repeat receptor protein kinase HPCA1-like [Lolium perenne] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5W6E7 | Putative leucine-rich repeat receptor-like protein kinase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0006105 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology