Basic Information
Locus ID:
Pt_Chr0601743
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 43076235 | 43079487 | + | Pt_Chr0601743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 43,622.20 Da | 61.12 | 58.74 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 272 | 313 | 2.79179E-23 | - |
| Pfam | PF13639 | Ring finger domain | 271 | 313 | 6.4E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 87 | 117 | 3.7E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 326 | 5.96E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 319 | 2.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 272 | 312 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 272 | 313 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 339 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_047055695.1 | probable E3 ubiquitin-protein ligase RHC1A [Lolium rigidum] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6EMD7 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology