Basic Information
Locus ID:
Pt_Chr0601628
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 40307791 | 40311286 | - | Pt_Chr0601628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 69,595.83 Da | 42.06 | 87.95 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 218 | 506 | 8.1E-94 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 118 | 2.2E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 118 | 3.92E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 14 | 151 | 3.2E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 129 | 0.0019 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 218 | 530 | 92.287247 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 101 | 11.481555 | IPR000210 |
| Coils | Coil | Coil | 590 | 610 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_051226215.1 | BTB/POZ domain-containing protein At5g03250-like [Lolium perenne] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6FRN7 | BTB/POZ domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology