Basic Information
Locus ID:
Pt_Chr0601626
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 40293833 | 40301554 | + | Pt_Chr0601626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 90,648.11 Da | 34.96 | 85.81 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 262 | 1.13082E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 8.5E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 254 | 0.27 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 665 | 822 | 1.9E-46 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 88 | 9.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 289 | 7.85E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 298 | 1.2E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 132 | 1.3E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 2.6E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 6.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.1E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 45 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.314676 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 14.054668 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 18.161219 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.788527 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 75 | 89 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 1.6E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 826 | 19.427681 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 421 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_051226214.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2-like isoform X2 [Lolium perenne] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EKL0 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology