Basic Information
Locus ID:
Pt_Chr0601625
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 40130486 | 40139639 | - | Pt_Chr0601625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 127,901.38 Da | 51.49 | 72.06 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1002 | 1111 | 9.03369E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 517 | 755 | 1.9256E-46 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1001 | 1101 | 1.9E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 866 | 903 | 3.9E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 536 | 755 | 2.7E-28 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 499 | 755 | 1.38E-25 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 762 | 1157 | 6.17E-53 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 865 | 912 | 3.12E-10 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 764 | 862 | 3.3E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 606 | 761 | 5.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 863 | 959 | 3.7E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 994 | 1152 | 1.6E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 487 | 580 | 9.8E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1018 | 1101 | 3.5E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 513 | 800 | 9.8E-12 | IPR014001 |
| SMART | SM00184 | ring_2 | 866 | 904 | 4.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 866 | 903 | 10.48287 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 995 | 1154 | 13.879983 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 881 | 890 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 374 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_051226210.1 | helicase-like transcription factor CHR28 isoform X1 [Lolium perenne] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453FNZ9 | Helicase-like transcription factor CHR28 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology