Basic Information
Locus ID:
Pt_Chr0601571
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 38915726 | 38917835 | - | Pt_Chr0601571 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 55,935.62 Da | 27.14 | 75.22 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 337 | 463 | 1.85908E-41 | IPR033734 |
| CDD | cd09612 | Jacalin | 150 | 279 | 1.76702E-38 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 334 | 463 | 2.4E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 150 | 279 | 1.3E-26 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 321 | 463 | 7.72E-39 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 134 | 279 | 2.09E-39 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 317 | 463 | 6.2E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 129 | 279 | 7.2E-47 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 150 | 281 | 3.0E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 334 | 464 | 8.8E-37 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 139 | 281 | 45.749676 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 323 | 464 | 48.882332 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 80 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.2 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_047071653.1 | jacalin-related lectin 3-like [Lolium rigidum] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453FND1 | Jacalin-type lectin domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology