Basic Information
Locus ID:
Pt_Chr0601476
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 36395727 | 36405220 | + | Pt_Chr0601476 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 81,255.82 Da | 45.90 | 85.66 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 267 | 378 | 8.1E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 542 | 587 | 2.6E-7 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 145 | 404 | 1.87E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 651 | 728 | 1.47E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 525 | 588 | 3.31E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 650 | 719 | 2.7E-7 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 522 | 593 | 5.9E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 147 | 414 | 5.2E-24 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 524 | 588 | 1.3E-5 | IPR014720 |
| SMART | SM00577 | forpap2 | 210 | 387 | 1.1E-8 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 651 | 717 | 7.3E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 523 | 589 | 12.183867 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 643 | 718 | 11.285643 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 151 | 400 | 14.977736 | IPR004274 |
| Coils | Coil | Coil | 570 | 590 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_037407425.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Triticum dicoccoides] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | I1HTI9 | protein-serine/threonine phosphatase OS=Brachypodium distachyon OX=15368 GN=100834480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology