Basic Information
Locus ID:
Pt_Chr0601419
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 34661898 | 34671592 | + | Pt_Chr0601419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 91,470.26 Da | 48.72 | 82.35 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 383 | 494 | 5.1E-8 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 747 | 824 | 1.65E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 648 | 684 | 2.15E-7 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 260 | 518 | 7.56E-24 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 746 | 815 | 3.2E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 262 | 522 | 8.2E-28 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 638 | 684 | 1.3 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 747 | 813 | 7.3E-5 | IPR014720 |
| SMART | SM00577 | forpap2 | 325 | 501 | 3.9E-9 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 652 | 685 | 9.586303 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 266 | 514 | 17.868364 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 739 | 814 | 11.285643 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 89 | - | - |
| Coils | Coil | Coil | 666 | 686 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_037407425.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Triticum dicoccoides] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | I1HTI9 | protein-serine/threonine phosphatase OS=Brachypodium distachyon OX=15368 GN=100834480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology